About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides09106-
Paelopatides09107SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides09108SRCR DOMAIN-CONTAINING PROTEIN
Paelopatides09109-
Paelopatides09110CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides09111PROTEIN CBG26694
Paelopatides09112-
Paelopatides09113-
Paelopatides09114NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides09115EPM2A-INTERACTING PROTEIN 1
Paelopatides09116PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides09117RETROTRANSPOSON
Paelopatides09118EPM2A-INTERACTING PROTEIN 1
Paelopatides09119REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides09120-
Paelopatides09121-
Paelopatides09122-
Paelopatides09124DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA49
Paelopatides09125-
Paelopatides09126CXC DOMAIN-CONTAINING PROTEIN-RELATED
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