About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides09065-
Paelopatides09066TRNA PSEUDOURIDINE SYNTHASE D
Paelopatides09067TRNA PSEUDOURIDINE SYNTHASE D
Paelopatides09068NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
Paelopatides09069TRNA PSEUDOURIDINE SYNTHASE D
Paelopatides09070-
Paelopatides09071PROTEIN CBG26694
Paelopatides09072-
Paelopatides09073PROTEIN PET117 HOMOLOG, MITOCHONDRIAL
Paelopatides09074DOUBLE ZINC RIBBON AND ANKYRIN REPEAT-CONTAINING PROTEIN 1
Paelopatides09075-
Paelopatides09076DOUBLE ZINC RIBBON AND ANKYRIN REPEAT-CONTAINING PROTEIN 1
Paelopatides09077KINETOCHORE-ASSOCIATED PROTEIN 1
Paelopatides09078DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides09079DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides09080PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides09081FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides09082PROTEIN ARGININE N-METHYLTRANSFERASE
Paelopatides09083NOTCH LIGAND FAMILY MEMBER
Paelopatides09084DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED
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