Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s062.g0057.t1 | HEAT SHOCK TRANSCRIPTION FACTOR |
| Lsat_s062.g0058.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 24 |
| Lsat_s062.g0059.t1 | PIKACHURIN-LIKE PROTEIN |
| Lsat_s062.g0060.t1 | - |
| Lsat_s062.g0061.t1 | |
| Lsat_s062.g0062.t1 | - |
| Lsat_s062.g0063.t1 | UBIQUITIN-PROTEIN LIGASE E3C |
| Lsat_s062.g0064.t1 | |
| Lsat_s062.g0065.t1 | HIGH MOBILITY GROUP PROTEIN 2 |
| Lsat_s062.g0066.t1 | |
| Lsat_s062.g0067.t1 | |
| Lsat_s062.g0068.t1 | COMPONENT OF OLIGOMERIC GOLGI COMPLEX 6 |
| Lsat_s062.g0069.t1 | UNCHARACTERIZED |
| Lsat_s062.g0070.t1 | |
| Lsat_s062.g0071.t1 | TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5 |
| Lsat_s062.g0072.t1 | INTERLEUKIN-27 SUBUNIT BETA |
| Lsat_s062.g0073.t1 | CYTOKINE RECEPTOR |
| Lsat_s062.g0074.t1 | NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED |
| Lsat_s062.g0075.t1 | STEROL CARRIER PROTEIN 2 SCP-2 FAMILY PROTEIN |
| Lsat_s062.g0076.t1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13 |
| Lsat_s062.g0077.t1 | CYTOKINE RECEPTOR |
| Lsat_s062.g0078.t1 | VASCULIN |
| Lsat_s062.g0079.t1 | TRANSMEMBRANE PROTEIN 69 |
| Lsat_s062.g0080.t1 | CYTOKINE RECEPTOR |
| Lsat_s062.g0081.t1 | |
| Lsat_s062.g0082.t1 | PROTEIN SIDEKICK |
| Lsat_s062.g0083.t1 | DRAB11-RELATED |
| Lsat_s062.g0084.t1 | ZINC FINGER SWIM DOMAIN CONTAINING PROTEIN 4, 5, 6 |
| Lsat_s062.g0085.t1 | JITTERBUG, ISOFORM N |
| Lsat_s062.g0086.t1 | METALLOPROTEASE TLDD |
| Lsat_s062.g0087.t1 | BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 6 |
| Lsat_s062.g0088.t1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
| Lsat_s062.g0089.t1 | POLY A POLYMERASE CID PAP -RELATED |
| Lsat_s062.g0090.t1 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
| Lsat_s062.g0091.t1 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
| Lsat_s062.g0092.t1 | GTP-BINDING PROTEIN-RELATED |
| Lsat_s062.g0093.t1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| Lsat_s062.g0094.t1 | UNCHARACTERIZED |
| Lsat_s062.g0095.t1 | |
| Lsat_s062.g0096.t1 | TRANSMEMBRANE PROTEIN 246 |
| Lsat_s062.g0097.t1 | |
| Lsat_s062.g0098.t1 | COMPLEMENT COMPONENT C6 |
| Lsat_s062.g0099.t1 | PROPERDIN |
| Lsat_s062.g0100.t1 | HILLARIN |
| Lsat_s062.g0101.t1 | HILLARIN |
| Lsat_s062.g0102.t1 | |
| Lsat_s062.g0103.t1 | HILLARIN |
| Lsat_s062.g0104.t1 | CYTOCHROME P450 508A4-RELATED |
| Lsat_s062.g0105.t1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| Lsat_s062.g0106.t1 | HOMEODOX-CONTAINING PROTEIN 1 HMBOX1 |
