Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s063.g0027.t1 | SLL0310 PROTEIN |
| Lsat_s063.g0028.t1 | |
| Lsat_s063.g0029.t1 | SLL0310 PROTEIN |
| Lsat_s063.g0030.t1 | |
| Lsat_s063.g0031.t1 | SLL0310 PROTEIN |
| Lsat_s063.g0032.t1 | ZINC FINGER PROTEIN 106 |
| Lsat_s063.g0033.t1 | SYNAPTOSOMAL ASSOCIATED PROTEIN |
| Lsat_s063.g0034.t1 | - |
| Lsat_s063.g0035.t1 | CANCER-RELATED NUCLEOSIDE-TRIPHOSPHATASE |
| Lsat_s063.g0036.t1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED |
| Lsat_s063.g0037.t1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| Lsat_s063.g0038.t1 | LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED |
| Lsat_s063.g0039.t1 | |
| Lsat_s063.g0040.t1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| Lsat_s063.g0041.t1 | N-ACETYLGALACTOSAMINYLTRANSFERASE |
| Lsat_s063.g0042.t1 | UBIQUITIN THIOLESTERASE PROTEIN OTUB |
| Lsat_s063.g0043.t1 | TESTICULAR SOLUBLE ADENYLYL CYCLASE |
| Lsat_s063.g0044.t1 | SOLUTE CARRIER FAMILY 39 ZINC TRANSPORTER , MEMBER 9-RELATED |
| Lsat_s063.g0045.t1 | ENHANCER OF RUDIMENTARY ERH |
| Lsat_s063.g0046.t1 | MYOTROPHIN |
| Lsat_s063.g0047.t1 | DDE_TNP_IS1595 DOMAIN-CONTAINING PROTEIN |
| Lsat_s063.g0048.t1 | GLUTAMINYL-PEPTIDE CYCLOTRANSFERASE |
| Lsat_s063.g0049.t1 | SERUM RESPONSE FACTOR HOMOLOG |
| Lsat_s063.g0050.t1 | RADICAL SAM PROTEINS |
| Lsat_s063.g0051.t1 | |
| Lsat_s063.g0052.t1 | RADICAL SAM PROTEINS |
| Lsat_s063.g0053.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
| Lsat_s063.g0054.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
| Lsat_s063.g0055.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
| Lsat_s063.g0056.t1 | NEUROTRANSMITTER GATED ION CHANNEL |
| Lsat_s063.g0057.t1 | LP10445P |
| Lsat_s063.g0058.t1 | HELICASE RELATED |
| Lsat_s063.g0059.t1 | MELANOMA INHIBITORY ACTIVITY-RELATED |
| Lsat_s063.g0060.t1 | THADA/DEATH RECEPTOR INTERACTING PROTEIN |
| Lsat_s063.g0061.t1 | FERM DOMAIN (PROTEIN4.1-EZRIN-RADIXIN-MOESIN) FAMILY |
| Lsat_s063.g0062.t1 | |
| Lsat_s063.g0063.t1 | TRANSPOSASE-RELATED |
| Lsat_s063.g0064.t1 | PHOSPHODIESTERASE HL |
| Lsat_s063.g0065.t1 | ATP SYNTHASE GAMMA-RELATED |
| Lsat_s063.g0066.t1 | |
| Lsat_s063.g0067.t1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7-RELATED |
| Lsat_s063.g0068.t1 | CEH-10 HOMEODOMAIN-CONTAINING HOMOLOG |
| Lsat_s063.g0069.t1 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
| Lsat_s063.g0070.t1 | PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED |
| Lsat_s063.g0071.t1 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
| Lsat_s063.g0072.t1 | |
| Lsat_s063.g0073.t1 | ARPIN |
| Lsat_s063.g0074.t1 | V-TYPE ATP SYNTHASE SUBUNIT D |
| Lsat_s063.g0075.t1 | SORTING NEXIN FAMILY MEMBER |
| Lsat_s063.g0076.t1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 175 |
