Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s062.g0107.t1 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
| Lsat_s062.g0108.t1 | CARBAMOYLTRANSFERASE FAMILY MEMBER |
| Lsat_s062.g0109.t1 | NISCHARIN RELATED |
| Lsat_s062.g0110.t1 | |
| Lsat_s062.g0111.t1 | NUCLEAR FACTOR I |
| Lsat_s062.g0112.t1 | EUKARYOTIC TRANSLATION ELONGATION FACTOR 1 EPSILON-1 |
| Lsat_s062.g0113.t1 | ZINC FINGER PROTEIN |
| Lsat_s062.g0114.t1 | |
| Lsat_s062.g0115.t1 | |
| Lsat_s062.g0116.t1 | |
| Lsat_s062.g0117.t1 | |
| Lsat_s062.g0118.t1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Lsat_s062.g0119.t1 | ACETYL-COENZYME A SYNTHETASE |
| Lsat_s062.g0120.t1 | SERINE-THREONINE PROTEIN KINASE |
| Lsat_s062.g0121.t1 | REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN |
| Lsat_s062.g0122.t1 | |
| Lsat_s062.g0123.t1 | NADPH OXIDASE |
| Lsat_s062.g0124.t1 | |
| Lsat_s062.g0125.t1 | UNCHARACTERIZED |
| Lsat_s062.g0126.t1 | REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN |
| Lsat_s062.g0127.t1 | |
| Lsat_s062.g0128.t1 | |
| Lsat_s062.g0129.t1 | |
| Lsat_s062.g0130.t1 | |
| Lsat_s063.g0001.t1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
| Lsat_s063.g0002.t1 | - |
| Lsat_s063.g0003.t1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 70 |
| Lsat_s063.g0004.t1 | D-TYROSYL-TRNA TYR DEACYLASE |
| Lsat_s063.g0005.t1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
| Lsat_s063.g0006.t1 | OPSIN |
| Lsat_s063.g0007.t1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
| Lsat_s063.g0008.t1 | |
| Lsat_s063.g0009.t1 | EH DOMAIN |
| Lsat_s063.g0010.t1 | PROTEIN YIPPEE-LIKE CG15309-RELATED |
| Lsat_s063.g0011.t1 | FI17866P1 |
| Lsat_s063.g0012.t1 | |
| Lsat_s063.g0013.t1 | PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE |
| Lsat_s063.g0014.t1 | LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEIN 11 |
| Lsat_s063.g0015.t1 | PROTEIN PHOSPHATASE 1 INHIBITOR POTENTIATED BY PROTEIN KINASE C |
| Lsat_s063.g0016.t1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
| Lsat_s063.g0017.t1 | |
| Lsat_s063.g0018.t1 | |
| Lsat_s063.g0019.t1 | RIBONUCLEASE P PROTEIN SUBUNIT P20 |
| Lsat_s063.g0020.t1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
| Lsat_s063.g0021.t1 | ALPHA- 1,6 -FUCOSYLTRANSFERASE |
| Lsat_s063.g0022.t1 | ALPHA- 1,6 -FUCOSYLTRANSFERASE |
| Lsat_s063.g0023.t1 | PROTEIN MAX MYC-ASSOCIATED FACTOR X |
| Lsat_s063.g0024.t1 | GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT |
| Lsat_s063.g0025.t1 | |
| Lsat_s063.g0026.t1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7-RELATED |
