About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides09382SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
Paelopatides09383-
Paelopatides09384MERLIN/MOESIN/EZRIN/RADIXIN
Paelopatides09385FERREDOXIN/ADRENODOXIN
Paelopatides09386FLAGELLAR RADIAL SPOKE PROTEIN 3
Paelopatides09387REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides09388OLIGORIBONUCLEASE, MITOCHONDRIAL
Paelopatides09389-
Paelopatides09390-
Paelopatides09391REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides09392HMG DOMAIN-CONTAINING PROTEIN 3
Paelopatides09393PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides09394-
Paelopatides09395MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3
Paelopatides09396RAN BINDING PROTEIN
Paelopatides09397-
Paelopatides09398-
Paelopatides09399-
Paelopatides09400TUMOR NECROSIS FACTOR RECEPTOR
Paelopatides09401NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
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