About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides09233-
Paelopatides09234EPM2A-INTERACTING PROTEIN 1
Paelopatides09235EPM2A-INTERACTING PROTEIN 1
Paelopatides09236RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED
Paelopatides09237ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides09238REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides09239-
Paelopatides09240-
Paelopatides09241PROTEIN FAM91A1
Paelopatides09242AGAP008228-PA
Paelopatides09243FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides09245ETHANOLAMINE-PHOSPHATE CYTIDYLYLTRANSFERASE
Paelopatides09246L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides09247PHOSPHOLIPASE B-RELATED
Paelopatides09248TESTIS-EXPRESSED PROTEIN 33
Paelopatides09249GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides09250-
Paelopatides09252SODIUM/CALCIUM EXCHANGER
Paelopatides09253-
Paelopatides09254D-ERYTHRULOSE REDUCTASE
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