About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides09486LYSOSOMAL COBALAMIN TRANSPORTER-RELATED
Paelopatides09487SI:CH211-171H4.7-RELATED
Paelopatides09488L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides09489-
Paelopatides09490PROTEIN CBG24663
Paelopatides09491PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides09492ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides09493-
Paelopatides09494PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides09495BONUS, ISOFORM C-RELATED
Paelopatides09496-
Paelopatides09497BONUS, ISOFORM C-RELATED
Paelopatides09498-
Paelopatides09499-
Paelopatides09500-
Paelopatides09501BETA-1,4-GALACTOSYLTRANSFERASE
Paelopatides09502-
Paelopatides09503-
Paelopatides09504NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides09505-
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