About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides09553ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides09554RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
Paelopatides09555-
Paelopatides09556-
Paelopatides09558-
Paelopatides09559MYELOID-DERIVED GROWTH FACTOR MYDGF
Paelopatides09560PROTEIN CBG16428
Paelopatides09561E3 UBIQUITIN-PROTEIN LIGASE MYCBP2
Paelopatides09562-
Paelopatides09563-
Paelopatides09564-
Paelopatides09565INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides09566ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides09567G PATCH DOMAIN CONTAINING PROTEIN
Paelopatides09568CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED
Paelopatides09569TRANSPOSON
Paelopatides09572REVERSE TRANSCRIPTASES
Paelopatides09573-
Paelopatides09574-
Paelopatides09575-
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