Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s071.g0072.t1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
Lsat_s071.g0073.t1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
Lsat_s071.g0074.t1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
Lsat_s071.g0075.t1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
Lsat_s071.g0076.t1 | ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE |
Lsat_s071.g0077.t1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
Lsat_s071.g0078.t1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
Lsat_s071.g0079.t1 | |
Lsat_s071.g0080.t1 | UNCHARACTERIZED |
Lsat_s071.g0081.t1 | |
Lsat_s071.g0082.t1 | MUCIN 4-RELATED |
Lsat_s071.g0083.t1 | TRANSLIN AND TRANSLIN ASSOCIATED PROTEIN X |
Lsat_s071.g0084.t1 | CEREBRAL PROTEIN-11-RELATED |
Lsat_s071.g0085.t1 | CLASP |
Lsat_s071.g0086.t1 | ORIGIN RECOGNITION COMPLEX SUBUNIT 4 |
Lsat_s071.g0087.t1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
Lsat_s071.g0088.t1 | TRANSMEMBRANE PROTEIN |
Lsat_s071.g0089.t1 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT |
Lsat_s071.g0090.t1 | |
Lsat_s071.g0091.t1 | ANNEXIN |
Lsat_s071.g0092.t1 | NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED |
Lsat_s071.g0093.t1 | UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED |
Lsat_s071.g0094.t1 | |
Lsat_s071.g0095.t1 | IONOTROPIC GLUTAMATE RECEPTOR |
Lsat_s071.g0096.t1 | IONOTROPIC GLUTAMATE RECEPTOR |
Lsat_s071.g0097.t1 | |
Lsat_s071.g0098.t1 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
Lsat_s071.g0099.t1 | |
Lsat_s071.g0100.t1 | |
Lsat_s071.g0101.t1 | G-PROTEIN COUPLED RECEPTOR |
Lsat_s071.g0102.t1 | |
Lsat_s071.g0103.t1 | PLACENTAL PROTEIN 11-RELATED |
Lsat_s071.g0104.t1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
Lsat_s071.g0105.t1 | N-LINKED OLIGOSACCHARIDE PROCESSING |
Lsat_s071.g0106.t1 | TESTICULAR HAPLOID EXPRESSED GENE PROTEIN |
Lsat_s071.g0107.t1 | HEPARANASE |
Lsat_s071.g0108.t1 | |
Lsat_s071.g0109.t1 | |
Lsat_s071.g0110.t1 | RNA METHYLASE-RELATED |
Lsat_s071.g0111.t1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
Lsat_s071.g0112.t1 | |
Lsat_s071.g0113.t1 | |
Lsat_s071.g0114.t1 | |
Lsat_s071.g0115.t1 | FTP DOMAIN-CONTAINING PROTEIN |
Lsat_s071.g0116.t1 | CRUMBS FAMILY MEMBER |
Lsat_s071.g0117.t1 | CARBONIC ANHYDRASE |
Lsat_s071.g0118.t1 | CYTOCHROME C OXIDASE ASSEMBLY FACTOR 3, MITOCHONDRIAL |
Lsat_s071.g0119.t1 | MUCIN 4-RELATED |
Lsat_s071.g0120.t1 | PROTEASE FAMILY M24 METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P |
Lsat_s071.g0121.t1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |