Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s077.g0052.t1 | SYNAPTOGYRIN |
Lsat_s077.g0053.t1 | ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 |
Lsat_s077.g0054.t1 | SYNAPTOGYRIN |
Lsat_s077.g0055.t1 | TRANSMEMBRANE CHANNEL-RELATED |
Lsat_s077.g0056.t1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
Lsat_s077.g0057.t1 | |
Lsat_s077.g0058.t1 | SYNAPTOGYRIN |
Lsat_s077.g0059.t1 | SYNAPTOGYRIN |
Lsat_s077.g0060.t1 | TRANSMEMBRANE CHANNEL-RELATED |
Lsat_s077.g0061.t1 | TRANSMEMBRANE CHANNEL-RELATED |
Lsat_s077.g0062.t1 | |
Lsat_s077.g0063.t1 | TRANSMEMBRANE CHANNEL-RELATED |
Lsat_s077.g0064.t1 | TRANSMEMBRANE CHANNEL-RELATED |
Lsat_s077.g0065.t1 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
Lsat_s077.g0066.t1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
Lsat_s077.g0067.t1 | DNA2/NAM7 HELICASE FAMILY |
Lsat_s077.g0068.t1 | |
Lsat_s077.g0069.t1 | |
Lsat_s077.g0070.t1 | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
Lsat_s077.g0071.t1 | LEUCOKININ RECEPTOR-RELATED |
Lsat_s077.g0072.t1 | |
Lsat_s077.g0073.t1 | CALDESMON |
Lsat_s077.g0074.t1 | |
Lsat_s077.g0075.t1 | |
Lsat_s077.g0076.t1 | |
Lsat_s077.g0077.t1 | |
Lsat_s077.g0078.t1 | RIBOSOME BIOGENESIS REGULATORY PROTEIN |
Lsat_s077.g0079.t1 | SORTING NEXIN |
Lsat_s077.g0080.t1 | PHOSPHOMANNOMUTASE |
Lsat_s077.g0081.t1 | UNCHARACTERIZED |
Lsat_s077.g0082.t1 | |
Lsat_s077.g0083.t1 | UNCHARACTERIZED |
Lsat_s077.g0084.t1 | UNCHARACTERIZED |
Lsat_s077.g0085.t1 | PROTEIN NJMU-R1 |
Lsat_s077.g0086.t1 | LETHAL 2 GIANT LARVAE PROTEIN |
Lsat_s077.g0087.t1 | SCAFFOLD ATTACHMENT FACTOR B-RELATED |
Lsat_s077.g0088.t1 | TUBULIN EPSILON AND DELTA COMPLEX PROTEIN 2 |
Lsat_s077.g0089.t1 | GLYCINE-RICH RNA-BINDING PROTEIN RZ1A |
Lsat_s077.g0090.t1 | TRANSMEMBRANE PROTEIN 246 |
Lsat_s077.g0091.t1 | TELOMERE LENGTH REGULATION PROTEIN TEL2 FAMILY MEMBER |
Lsat_s077.g0092.t1 | EXPORTIN-6 |
Lsat_s077.g0093.t1 | |
Lsat_s077.g0094.t1 | |
Lsat_s077.g0095.t1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
Lsat_s077.g0096.t1 | |
Lsat_s077.g0097.t1 | EXPORTIN-6 |
Lsat_s077.g0098.t1 | |
Lsat_s077.g0099.t1 | |
Lsat_s077.g0100.t1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
Lsat_s077.g0101.t1 |