Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s078.g0025.t1 | SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN |
| Lsat_s078.g0026.t1 | |
| Lsat_s078.g0027.t1 | BARDET-BIEDL SYNDROME 1 PROTEIN |
| Lsat_s078.g0028.t1 | USP DOMAIN-CONTAINING PROTEIN |
| Lsat_s078.g0029.t1 | UNCHARACTERIZED |
| Lsat_s078.g0030.t1 | UNCHARACTERIZED |
| Lsat_s078.g0031.t1 | CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81 |
| Lsat_s078.g0032.t1 | |
| Lsat_s078.g0033.t1 | |
| Lsat_s078.g0034.t1 | ARV1 |
| Lsat_s078.g0035.t1 | PURPLE ACID PHOSPHATASE |
| Lsat_s078.g0036.t1 | 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1 |
| Lsat_s078.g0037.t1 | SCY1-RELATED S/T PROTEIN KINASE-LIKE |
| Lsat_s078.g0038.t1 | |
| Lsat_s078.g0039.t1 | UNCHARACTERIZED |
| Lsat_s078.g0040.t1 | 60S RIBOSOMAL PROTEIN L12 |
| Lsat_s078.g0041.t1 | SIMILAR TO CDNA SEQUENCE BC052040 |
| Lsat_s078.g0042.t1 | COILIN |
| Lsat_s078.g0043.t1 | |
| Lsat_s078.g0044.t1 | |
| Lsat_s078.g0045.t1 | |
| Lsat_s078.g0046.t1 | |
| Lsat_s078.g0047.t1 | |
| Lsat_s078.g0048.t1 | |
| Lsat_s078.g0049.t1 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS |
| Lsat_s078.g0050.t1 | |
| Lsat_s078.g0051.t1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
| Lsat_s078.g0052.t1 | APOPTOGENIC PROTEIN 1, MITOCHONDRIAL |
| Lsat_s078.g0053.t1 | VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED |
| Lsat_s078.g0054.t1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| Lsat_s078.g0055.t1 | CALPAIN |
| Lsat_s078.g0056.t1 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
| Lsat_s078.g0057.t1 | INTERFERON-INDUCED PROTEIN 35/NMI N-MYC/STAT INTERACTING PROTEIN |
| Lsat_s078.g0058.t1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Lsat_s078.g0059.t1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
| Lsat_s078.g0060.t1 | PROTEIN DISPATCHED-RELATED |
| Lsat_s078.g0061.t1 | - |
| Lsat_s078.g0062.t1 | RAP GTPASE-ACTIVATING PROTEIN |
| Lsat_s078.g0063.t1 | HYDROXYACYL-THIOESTER DEHYDRATASE TYPE 2, MITOCHONDRIAL-RELATED |
| Lsat_s078.g0064.t1 | AXIN INTERACTOR, DORSALIZATION-ASSOCIATED PROTEIN |
| Lsat_s078.g0065.t1 | CASEIN KINASE-RELATED |
| Lsat_s078.g0066.t1 | RBM25 PROTEIN |
| Lsat_s078.g0067.t1 | RBM25 PROTEIN |
| Lsat_s078.g0068.t1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| Lsat_s078.g0069.t1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| Lsat_s078.g0070.t1 | WD40 REPEAT DOMAIN 95 |
| Lsat_s078.g0071.t1 | |
| Lsat_s078.g0072.t1 | |
| Lsat_s078.g0073.t1 | |
| Lsat_s078.g0074.t1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
