About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g12112
Clavulariidae_g12113
Clavulariidae_g12114
Clavulariidae_g12115REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12116REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12117SH2-SH3 ADAPTOR PROTEIN-RELATED
Clavulariidae_g12118THAP DOMAIN-CONTAINING PROTEIN 9
Clavulariidae_g12119REVERSE TRANSCRIPTASES
Clavulariidae_g1212PUTATIVE-RELATED
Clavulariidae_g12120MULTI-COPPER OXIDASE
Clavulariidae_g12121
Clavulariidae_g12122E3 UBIQUITIN-PROTEIN LIGASE MIB2
Clavulariidae_g12123CXC DOMAIN-CONTAINING PROTEIN-RELATED
Clavulariidae_g12124MULTI-COPPER OXIDASE
Clavulariidae_g12125E3 UBIQUITIN-PROTEIN LIGASE MIB2
Clavulariidae_g12126ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12127
Clavulariidae_g12128E3 UBIQUITIN-PROTEIN LIGASE MIB2
Clavulariidae_g12129
Clavulariidae_g1213UNCHARACTERIZED
Clavulariidae_g12130ATP-DEPENDENT DNA HELICASE
Clavulariidae_g12131ACROSIN-RELATED
Clavulariidae_g12132GDP-D-GLUCOSE PHOSPHORYLASE 1
Clavulariidae_g12133
Clavulariidae_g12134RING-TYPE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12135TNF RECEPTOR ASSOCIATED FACTOR
Clavulariidae_g12136LEUCOKININ RECEPTOR-RELATED
Clavulariidae_g12137TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12138PRE-MRNA-PROCESSING PROTEIN PRP40
Clavulariidae_g12139MOLTING PROTEIN MLT-4
Clavulariidae_g1214UNCHARACTERIZED
Clavulariidae_g12140TETRASPANIN
Clavulariidae_g12141NUCLEOSIDE DIPHOSPHATE KINASE 6
Clavulariidae_g12142UNCHARACTERIZED
Clavulariidae_g12143GUANYL-NUCLEOTIDE EXCHANGE FACTOR
Clavulariidae_g12144LYSOSOMAL COBALAMIN TRANSPORTER-RELATED
Clavulariidae_g12145UNCHARACTERIZED
Clavulariidae_g12146
Clavulariidae_g12147
Clavulariidae_g12148
Clavulariidae_g12149CYSTEINE PROTEASE FAMILY C1-RELATED
Clavulariidae_g1215PROTEIN CBG26694
Clavulariidae_g12150OXIDATIVE STRESS-RESPONSE SERINE-RICH PROTEIN 1
Clavulariidae_g12151TRANSMEMBRANE PROTEIN 65
Clavulariidae_g12152DNA PRIMASE LARGE SUBUNIT
Clavulariidae_g12153DNA2/NAM7 HELICASE FAMILY
Clavulariidae_g12154N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE
Clavulariidae_g12155N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE
Clavulariidae_g12156N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE
Clavulariidae_g12157N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE
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