Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g12112 | |
Clavulariidae_g12113 | |
Clavulariidae_g12114 | |
Clavulariidae_g12115 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12116 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12117 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
Clavulariidae_g12118 | THAP DOMAIN-CONTAINING PROTEIN 9 |
Clavulariidae_g12119 | REVERSE TRANSCRIPTASES |
Clavulariidae_g1212 | PUTATIVE-RELATED |
Clavulariidae_g12120 | MULTI-COPPER OXIDASE |
Clavulariidae_g12121 | |
Clavulariidae_g12122 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
Clavulariidae_g12123 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Clavulariidae_g12124 | MULTI-COPPER OXIDASE |
Clavulariidae_g12125 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
Clavulariidae_g12126 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12127 | |
Clavulariidae_g12128 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
Clavulariidae_g12129 | |
Clavulariidae_g1213 | UNCHARACTERIZED |
Clavulariidae_g12130 | ATP-DEPENDENT DNA HELICASE |
Clavulariidae_g12131 | ACROSIN-RELATED |
Clavulariidae_g12132 | GDP-D-GLUCOSE PHOSPHORYLASE 1 |
Clavulariidae_g12133 | |
Clavulariidae_g12134 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12135 | TNF RECEPTOR ASSOCIATED FACTOR |
Clavulariidae_g12136 | LEUCOKININ RECEPTOR-RELATED |
Clavulariidae_g12137 | TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12138 | PRE-MRNA-PROCESSING PROTEIN PRP40 |
Clavulariidae_g12139 | MOLTING PROTEIN MLT-4 |
Clavulariidae_g1214 | UNCHARACTERIZED |
Clavulariidae_g12140 | TETRASPANIN |
Clavulariidae_g12141 | NUCLEOSIDE DIPHOSPHATE KINASE 6 |
Clavulariidae_g12142 | UNCHARACTERIZED |
Clavulariidae_g12143 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
Clavulariidae_g12144 | LYSOSOMAL COBALAMIN TRANSPORTER-RELATED |
Clavulariidae_g12145 | UNCHARACTERIZED |
Clavulariidae_g12146 | |
Clavulariidae_g12147 | |
Clavulariidae_g12148 | |
Clavulariidae_g12149 | CYSTEINE PROTEASE FAMILY C1-RELATED |
Clavulariidae_g1215 | PROTEIN CBG26694 |
Clavulariidae_g12150 | OXIDATIVE STRESS-RESPONSE SERINE-RICH PROTEIN 1 |
Clavulariidae_g12151 | TRANSMEMBRANE PROTEIN 65 |
Clavulariidae_g12152 | DNA PRIMASE LARGE SUBUNIT |
Clavulariidae_g12153 | DNA2/NAM7 HELICASE FAMILY |
Clavulariidae_g12154 | N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE |
Clavulariidae_g12155 | N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE |
Clavulariidae_g12156 | N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE |
Clavulariidae_g12157 | N-HYDROXYARYLAMINE O-ACETYLTRANSFERASE |