About Trachythela sp. YZ-2020

Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Trachythela sp. YZ-2020CnidariaTrachythela sp., Cold-water corals (CWCs)Cold seep/Hydrothermal vent~1068slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS)2770514

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
IDSSE_Tra_sp_1.0578.2MbContig2020JADLSH01Institute of Deep-Sea Science and Engineering,Chinese Academy of SciencesPRJNA66197590.70%35,305

References
TitleJournalPubmed ID
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)Genome Biology and Evolution33331875

Gene Information

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Gene IDDescription
Clavulariidae_g12068REVERSE TRANSCRIPTASE
Clavulariidae_g12069
Clavulariidae_g1207OXIDASE/PEROXIDASE
Clavulariidae_g12070
Clavulariidae_g12071
Clavulariidae_g12072
Clavulariidae_g12073
Clavulariidae_g12074SRCR DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12075
Clavulariidae_g12076
Clavulariidae_g12077PX DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12078
Clavulariidae_g12079KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE
Clavulariidae_g1208TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g12080REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12081REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12082RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12083INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g12084
Clavulariidae_g12085PROTEIN B, PUTATIVE-RELATED-RELATED
Clavulariidae_g12086
Clavulariidae_g12087
Clavulariidae_g12088DNA HELICASE RECQ FAMILY MEMBER
Clavulariidae_g12089
Clavulariidae_g1209
Clavulariidae_g12090COLLAGEN ALPHA
Clavulariidae_g12091UBIQUITIN SPECIFIC PROTEINASE
Clavulariidae_g12092INTERFERON-INDUCIBLE GTPASE
Clavulariidae_g12093INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g12094COLLAGEN ALPHA
Clavulariidae_g12095INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Clavulariidae_g12096REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12097
Clavulariidae_g12098
Clavulariidae_g12099HEPARAN SULFATE SULFOTRANSFERASE
Clavulariidae_g121
Clavulariidae_g1210TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Clavulariidae_g12100HEPARAN SULFATE SULFOTRANSFERASE
Clavulariidae_g12101PROTEIN CBG26694
Clavulariidae_g12102
Clavulariidae_g12103ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
Clavulariidae_g12104EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER
Clavulariidae_g12105
Clavulariidae_g1210652 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Clavulariidae_g12107COLLAGEN ALPHA
Clavulariidae_g12108COLLAGEN ALPHA
Clavulariidae_g12109PROTEIN CBG26694
Clavulariidae_g1211ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Clavulariidae_g12110PROTEIN CBG26694
Clavulariidae_g12111
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