Cold-water corals Trachythela sp. YZ-2020 are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. They live in the cold, dark, and hypoxic deep-sea waters and are widespread around the world. Most of them must attach to hard-bottom substrates to grow, and only a few can live on soft sediments. Due to the lack of symbiotic zooxanthellae, they do not require sunlight as a source of energy, and their major source of nutrients is the microscopic zooplankton that comes from passing currents or descends from the surface of the ocean.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Trachythela sp. YZ-2020 | Cnidaria | Trachythela sp., Cold-water corals (CWCs) | Cold seep/Hydrothermal vent | ~1068 | slope of the Xisha Trough (18°53′N, 112°66′E, July 2019) in the South China Sea (SCS) | 2770514 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
IDSSE_Tra_sp_1.0 | 578.2Mb | Contig | 2020 | JADLSH01 | Institute of Deep-Sea Science and Engineering,Chinese Academy of Sciences | PRJNA661975 | 90.70% | 35,305 |
Title | Journal | Pubmed ID |
---|---|---|
The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae) | Genome Biology and Evolution | 33331875 |
Gene ID | Description |
---|---|
Clavulariidae_g12068 | REVERSE TRANSCRIPTASE |
Clavulariidae_g12069 | |
Clavulariidae_g1207 | OXIDASE/PEROXIDASE |
Clavulariidae_g12070 | |
Clavulariidae_g12071 | |
Clavulariidae_g12072 | |
Clavulariidae_g12073 | |
Clavulariidae_g12074 | SRCR DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12075 | |
Clavulariidae_g12076 | |
Clavulariidae_g12077 | PX DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12078 | |
Clavulariidae_g12079 | KERATIN, ULTRA HIGH-SULFUR MATRIX PROTEIN-LIKE |
Clavulariidae_g1208 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g12080 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12081 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12082 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12083 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Clavulariidae_g12084 | |
Clavulariidae_g12085 | PROTEIN B, PUTATIVE-RELATED-RELATED |
Clavulariidae_g12086 | |
Clavulariidae_g12087 | |
Clavulariidae_g12088 | DNA HELICASE RECQ FAMILY MEMBER |
Clavulariidae_g12089 | |
Clavulariidae_g1209 | |
Clavulariidae_g12090 | COLLAGEN ALPHA |
Clavulariidae_g12091 | UBIQUITIN SPECIFIC PROTEINASE |
Clavulariidae_g12092 | INTERFERON-INDUCIBLE GTPASE |
Clavulariidae_g12093 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Clavulariidae_g12094 | COLLAGEN ALPHA |
Clavulariidae_g12095 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Clavulariidae_g12096 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12097 | |
Clavulariidae_g12098 | |
Clavulariidae_g12099 | HEPARAN SULFATE SULFOTRANSFERASE |
Clavulariidae_g121 | |
Clavulariidae_g1210 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Clavulariidae_g12100 | HEPARAN SULFATE SULFOTRANSFERASE |
Clavulariidae_g12101 | PROTEIN CBG26694 |
Clavulariidae_g12102 | |
Clavulariidae_g12103 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
Clavulariidae_g12104 | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER |
Clavulariidae_g12105 | |
Clavulariidae_g12106 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Clavulariidae_g12107 | COLLAGEN ALPHA |
Clavulariidae_g12108 | COLLAGEN ALPHA |
Clavulariidae_g12109 | PROTEIN CBG26694 |
Clavulariidae_g1211 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Clavulariidae_g12110 | PROTEIN CBG26694 |
Clavulariidae_g12111 |