About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides11401PROTEIN, PUTATIVE-RELATED
Paelopatides11402E3 UBIQUITIN-PROTEIN LIGASE HECTD3
Paelopatides11403REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides11404NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides11405ENDONUCLEASE-RELATED
Paelopatides11406ENZYMATIC POLYPROTEIN-RELATED
Paelopatides11407TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides11408-
Paelopatides11409ADIPOGENESIS REGULATORY FACTOR
Paelopatides11410-
Paelopatides11411-
Paelopatides11412-
Paelopatides11413RETROTRANSPOSON
Paelopatides11414UNCHARACTERIZED
Paelopatides11415PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides11416AG-1 BLOOD STAGE MEMBRANE PROTEIN HOMOLOGUE
Paelopatides11417EPM2A-INTERACTING PROTEIN 1
Paelopatides11418-
Paelopatides11419-
Paelopatides11420ATP-BINDING CASSETTE SUB-FAMILY C
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