The Atlantic deep-sea scallop Placopecten magellanicus is a species in the family Pectinidae. And they are a commercially important pectinid bivalve mollusk native to the northwest Atlantic Ocean. In addition, they are found on the continental shelf of the northwest Atlantic from the north shore of the Gulf of St. Lawrence south to Cape Hatteras, North Carolina.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Placopecten magellanicus | Mollusca | deep-sea scallop | Hydrothermal vent | 0-384 | Dalian in the Liaoning Province of China (38.43 N 120.91 E) | 6577 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| - | 1.83Gb | Chromosome | 2023 | - | Dalian Key Laboratory of Genetic Resources for Marine Shellfish, Liaoning Ocean and Fisheries Science Research Institute | PRJNA923123 | 94.10% | 28,111 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Chromosome-level genome assembly of sea scallop Placopecten magellanicus provides insights into the genetic characteristics and adaptive evolution of large scallops | Genomics | 37977331 |
| Gene ID | Description |
|---|---|
| PMEG.utg000058l.87 | FACT COMPLEX SUBUNIT SSRP1 |
| PMEG.utg000058l.88 | SUGAR KINASE |
| PMEG.utg000058l.89 | UNCHARACTERIZED |
| PMEG.utg000058l.9 | USP DOMAIN-CONTAINING PROTEIN |
| PMEG.utg000058l.90 | RNA BINDING PROTEIN |
| PMEG.utg000058l.91 | OVOCHYMASE-RELATED |
| PMEG.utg000058l.92 | ACROSIN-RELATED |
| PMEG.utg000058l.93 | COILED-COIL DOMAIN-CONTAINING PROTEIN 189 |
| PMEG.utg000058l.94 | DNA REPAIR PROTEIN RAD51 HOMOLOG 3 RAD51C |
| PMEG.utg000058l.95 | PROTEIN PHOSPHATASE |
| PMEG.utg000058l.96 | E3 UBIQUITIN-PROTEIN LIGASE TRIM37 |
| PMEG.utg000059l.2 | |
| PMEG.utg000059l.3 | MITOCHONDRIAL RIBOSOMAL PROTEIN S31 |
| PMEG.utg000059l.4 | PALMITOYLTRANSFERASE ZDHHC16 |
| PMEG.utg000059l.5 | UNCHARACTERIZED |
| PMEG.utg000059l.6 | CALPONIN |
| PMEG.utg000059l.7 | CYTOCHROME P450 FAMILY 4 |
| PMEG.utg000060l.1 | 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE |
| PMEG.utg000060l.10 | RHO FAMILY GTPASE |
| PMEG.utg000060l.2 | BAT2 HLA-B-ASSOCIATED TRANSCRIPT 2 |
| PMEG.utg000060l.3 | RAW, ISOFORM A |
| PMEG.utg000060l.4 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 |
| PMEG.utg000060l.5 | AMPHIPHYSIN |
| PMEG.utg000060l.6 | SWI/SNF COMPLEX-RELATED |
| PMEG.utg000060l.7 | ZETA-COAT PROTEIN |
| PMEG.utg000060l.8 | PROTEIN ZERKNUELLT 1-RELATED |
| PMEG.utg000060l.9 | 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED |
| PMEG.utg000061l.1 | 1-AMINOCYCLOPROPANE-1-CARBOXYLATE DEAMINASE-RELATED |
| PMEG.utg000062l.10 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
| PMEG.utg000062l.100 | RUBY-EYE2-LIKE PROTEIN |
| PMEG.utg000062l.101 | CYTOCHROME P450 FAMILY 3 |
| PMEG.utg000062l.102 | CYTOCHROME P450 FAMILY 3 |
| PMEG.utg000062l.103 | VINCULIN |
| PMEG.utg000062l.104 | FORKHEAD BOX PROTEIN N1 |
| PMEG.utg000062l.105 | FARNESYLCYSTEINE LYASE |
| PMEG.utg000062l.106 | DIABLO HOMOLOG, MITOCHONDRIAL |
| PMEG.utg000062l.11 | SERINE PROTEASE-RELATED |
| PMEG.utg000062l.12 | GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE 1 |
| PMEG.utg000062l.13 | TRANSCRIPTION FACTOR ONECUT |
| PMEG.utg000062l.14 | WD40 REPEAT PROTEIN 4 |
| PMEG.utg000062l.15 | CYTOCHROME P450 FAMILY 3 |
| PMEG.utg000062l.16 | GLYCOSYL HYDROLASE DIGH |
| PMEG.utg000062l.17 | - |
| PMEG.utg000062l.18 | 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N |
| PMEG.utg000062l.19 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| PMEG.utg000062l.2 | OS10G0105400 PROTEIN |
| PMEG.utg000062l.21 | |
| PMEG.utg000062l.22 | |
| PMEG.utg000062l.23 | MAP-KINASE ACTIVATING DEATH DOMAIN PROTEIN MADD /DENN/AEX-3 C.ELEGANS |
| PMEG.utg000062l.24 | SOLUTE CARRIER FAMILY 17 |
