About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides11791ALKALINE PHOSPHATASE
Paelopatides11792-
Paelopatides11793PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY M MEMBER 2
Paelopatides11796BETA-HEXOSAMINIDASE
Paelopatides11797INTEGRIN ALPHA
Paelopatides11798INTEGRIN ALPHA
Paelopatides11799-
Paelopatides11800ENDOGLIN/TGF-BETA RECEPTOR TYPE III
Paelopatides11801PHOSPHOLIPASE B, PLB1
Paelopatides11802RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides11803ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides11804PROTEIN CBG26694
Paelopatides11805BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED
Paelopatides11806UNCONVENTIONAL MYOSIN-XVI
Paelopatides11807-
Paelopatides11808-
Paelopatides11809AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED
Paelopatides11810EPM2A-INTERACTING PROTEIN 1
Paelopatides11811-
Paelopatides11812-
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