About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides11750CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides11751-
Paelopatides11752PROTEIN CBG26694
Paelopatides11753RETROTRANSPOSON
Paelopatides11754FORMIN-BINDING PROTEIN 4
Paelopatides11755-
Paelopatides11756-
Paelopatides11757REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides11758REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides11759DNA LIGASE
Paelopatides11760NETRIN RECEPTOR UNC5
Paelopatides11761PROTEIN CBG26694
Paelopatides11762-
Paelopatides11763PROTEIN CBG26694
Paelopatides11764ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides11765-
Paelopatides11766-
Paelopatides11767NXPE FAMILY MEMBER
Paelopatides11768PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides11769FIBRINOGEN/TENASCIN/ANGIOPOEITIN
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