About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides11770REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides11771MULTICOPPER OXIDASE-RELATED
Paelopatides11772-
Paelopatides11773-
Paelopatides11774REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT
Paelopatides11775REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides11776GALACTOSE-3-O-SULFOTRANSFERASE
Paelopatides11777-
Paelopatides11778PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides11779PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides11780-
Paelopatides11781RYANODINE RECEPTOR AND IP3 RECEPTOR
Paelopatides11782-
Paelopatides11784-
Paelopatides11785-
Paelopatides1178652 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides11787-
Paelopatides11788TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
Paelopatides11789ALKALINE PHOSPHATASE
Paelopatides11790ALKALINE PHOSPHATASE
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