About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides11881CALCIUM-BINDING PROTEIN 8-RELATED
Paelopatides11882REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides11883REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides11884-
Paelopatides11885RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides11886-
Paelopatides11887-
Paelopatides11888AP ENDONUCLEASE
Paelopatides1188952 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides11891-
Paelopatides11892-
Paelopatides11893-
Paelopatides11894ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides11895POL PROTEIN
Paelopatides11896PEPTIDASE
Paelopatides11897SI:CH211-108C17.2-RELATED-RELATED
Paelopatides11898PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides11899PROTEIN CBG26694
Paelopatides11900POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING
Paelopatides11901PROTEIN CBG26694
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