About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides11999ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN
Paelopatides12001ASPARTYL/LYSYL-TRNA SYNTHETASE
Paelopatides12002SI:CH211-196P9.1-RELATED
Paelopatides12003TRANSMEMBRANE CHANNEL-RELATED
Paelopatides12004-
Paelopatides12005PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides12006RETROTRANSPOSON
Paelopatides12007RETROTRANSPOSON
Paelopatides12008RETROTRANSPOSON
Paelopatides12009-
Paelopatides12010FI04643P-RELATED
Paelopatides12011HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides12012CEREBELLIN-RELATED
Paelopatides12015FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides12016PARANEOPLASTIC ANTIGEN
Paelopatides12017PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides12018TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides12019ENZYMATIC POLYPROTEIN-RELATED
Paelopatides12020ENDONUCLEASE-RELATED
Paelopatides12021ENDONUCLEASE-RELATED
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