About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides12042-
Paelopatides120432-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA
Paelopatides12044-
Paelopatides12045ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1
Paelopatides12046ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1
Paelopatides12047L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides12048ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides12050-
Paelopatides12051RETROTRANSPOSON
Paelopatides12052MITOTIC-SPINDLE ORGANIZING PROTEIN 2A-RELATED
Paelopatides12053SESQUIPEDALIAN
Paelopatides12055MYELOID-DERIVED GROWTH FACTOR MYDGF
Paelopatides12057TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides12058ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides12059-
Paelopatides12060LACTOYLGLUTATHIONE LYASE GLYOXALASE I
Paelopatides12061SUCCINATE DEHYDROGENASE ASSEMBLY FACTOR 1, MITOCHONDRIAL
Paelopatides12062ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides12063-
Paelopatides12064FIBRINOGEN/TENASCIN/ANGIOPOEITIN
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