About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides12086-
Paelopatides12087PROTEIN CBG26694
Paelopatides12088PROTEIN CBG26694
Paelopatides12089PROTEIN CBG26694
Paelopatides12090-
Paelopatides12091FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides12092-
Paelopatides12093CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides12094PROTEIN CBG26694
Paelopatides12095CYSTEINE-RICH SECRETORY PROTEIN-RELATED
Paelopatides12096UBIQUITIN-CONJUGATING ENZYME E2
Paelopatides12097-
Paelopatides12098POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1
Paelopatides12099TRANSPOSON
Paelopatides12100-
Paelopatides12101RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides12102NETRIN RECEPTOR UNC5
Paelopatides12103NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides12104SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS
Paelopatides12105PROTEIN CBG26694
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