About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides12301REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides12302-
Paelopatides12303CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER
Paelopatides12304ENDONUCLEASE-RELATED
Paelopatides12305POU DOMAIN
Paelopatides12306NNP-1 PROTEIN NOVEL NUCLEAR PROTEIN 1 NOP52
Paelopatides12307-
Paelopatides12308-
Paelopatides12309CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Paelopatides12310-
Paelopatides12311-
Paelopatides12312FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides12313ENDONUCLEASE
Paelopatides12314-
Paelopatides12315PARANEOPLASTIC ANTIGEN
Paelopatides12316PROTEIN CBG26694
Paelopatides12317PARANEOPLASTIC ANTIGEN
Paelopatides12318ENDONUCLEASE-RELATED
Paelopatides12319KN MOTIF AND ANKYRIN REPEAT DOMAIN-CONTAINING
Paelopatides12320CXC DOMAIN-CONTAINING PROTEIN-RELATED
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