About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides12194ENDONUCLEASE-RELATED
Paelopatides12195-
Paelopatides12196PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides12197EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN
Paelopatides12198PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides12199EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED
Paelopatides12200FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides12202SI:CH211-196P9.1-RELATED
Paelopatides12203-
Paelopatides12204-
Paelopatides12205-
Paelopatides12206CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides12207-
Paelopatides12208REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides12209LD33804P
Paelopatides12210-
Paelopatides12211RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412-LIKE PROTEIN-RELATED
Paelopatides12212CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING
Paelopatides12213ENDONUCLEASE-RELATED
Paelopatides12214POL PROTEIN
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