About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides12171-
Paelopatides12172NEUROTRANSMITTER GATED ION CHANNEL
Paelopatides12173FTP DOMAIN-CONTAINING PROTEIN
Paelopatides12174FIBRILLIN-RELATED
Paelopatides12175ACYL-MALONYL CONDENSING ENZYME-RELATED
Paelopatides12176PROTEIN CBG26694
Paelopatides12177CENTROSOMAL PROTEIN OF 290 KDA
Paelopatides12178CENTROSOMAL PROTEIN OF 290 KDA
Paelopatides12179TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides12180OXIDASE/PEROXIDASE
Paelopatides12181OXIDASE/PEROXIDASE
Paelopatides12182-
Paelopatides12183ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides12186-
Paelopatides12187ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides12188CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides12189RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1
Paelopatides12190BUCENTAUR RELATED
Paelopatides12191FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides12192RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 2, ISOFORM D
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