About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides12953BASIGIN RELATED
Paelopatides12954-
Paelopatides12955TRANSPOSABLE ELEMENT-RELATED
Paelopatides12956C2H2-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides12957-
Paelopatides12958NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides12959-
Paelopatides12960-
Paelopatides12961INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Paelopatides12962UNCHARACTERIZED
Paelopatides12963-
Paelopatides12964-
Paelopatides12965ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides12967PROTEIN CBG26694
Paelopatides12968PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides12969REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides12970TYROSINE-PROTEIN KINASE RECEPTOR
Paelopatides12971TYROSINE-PROTEIN KINASE
Paelopatides12972AUGMIN SUBUNIT 5
Paelopatides1297339S RIBOSOMAL PROTEIN L40, MITOCHONDRIAL
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