About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides13014PROTEIN CBG26694
Paelopatides13015PROTEIN CBG26694
Paelopatides13016-
Paelopatides13017EPM2A-INTERACTING PROTEIN 1
Paelopatides13018REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides13019ELKS/RAB6-INTERACTING/CAST PROTEIN
Paelopatides13020ELKS/RAB6-INTERACTING/CAST PROTEIN
Paelopatides13021-
Paelopatides13022UNCHARACTERIZED
Paelopatides13023-
Paelopatides13024-
Paelopatides13025CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides13026-
Paelopatides13027DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN
Paelopatides13028-
Paelopatides13029EPM2A-INTERACTING PROTEIN 1
Paelopatides13031ELONGATION FACTOR G, MITOCHONDRIAL
Paelopatides13032ELONGATION FACTOR G, MITOCHONDRIAL
Paelopatides13033GPALPP MOTIFS-CONTAINING PROTEIN 1
Paelopatides13034REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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