About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides13080-
Paelopatides13081BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE
Paelopatides13082TROPONIN C-AKIN-1 PROTEIN
Paelopatides13083-
Paelopatides13084PROTEIN CBG26694
Paelopatides13085PROTEIN CBG26694
Paelopatides13086L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides13087GLYCOPROTEIN HORMONE RECEPTOR
Paelopatides13088-
Paelopatides13089-
Paelopatides13090INACTIVE TYROSINE-PROTEIN KINASE 7
Paelopatides13091-
Paelopatides13092SIGNALING LYMPHOCYTIC ACTIVATION MOLECULE
Paelopatides13093L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides13094FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides13095REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides13096-
Paelopatides13097FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides13098FIBRINOGEN ALPHA CHAIN
Paelopatides13099-
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