About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides13059DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides13060-
Paelopatides13061-
Paelopatides13062E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED
Paelopatides13063RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides13064-
Paelopatides13065TRANSCRIPTION FACTOR LBX
Paelopatides13066ALPHA-AMYLASE
Paelopatides13067PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides13068RETROTRANSPOSON
Paelopatides13069TRNA (CYTOSINE(38)-C(5))-METHYLTRANSFERASE
Paelopatides13070PROTEASE M1 ZINC METALLOPROTEASE
Paelopatides13071-
Paelopatides13072-
Paelopatides13073PLACENTAL PROTEIN 11-RELATED
Paelopatides13074-
Paelopatides13075-
Paelopatides13076ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides13077PEROXISOMAL SARCOSINE OXIDASE
Paelopatides13079-
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