About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides13927GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides13928PROTEIN CBG26694
Paelopatides13929PROTEIN CBG26694
Paelopatides13930TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides13931-
Paelopatides13932TRIOKINASE/FMN CYCLASE
Paelopatides13933-
Paelopatides13934PROTEIN-TYROSINE-PHOSPHATASE
Paelopatides13935TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATED
Paelopatides13936PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides13937UBIQUITIN-CONJUGATING ENZYME E2
Paelopatides13938RETICULOCALBIN
Paelopatides13939PHOSPHATIDYLINOSITOL SYNTHASE
Paelopatides13940-
Paelopatides13941O-METHYLTRANSFERASE-RELATED
Paelopatides13942-
Paelopatides13943CARBOXYLESTERASE
Paelopatides13944PROTEIN CBG26694
Paelopatides13945SI:CH211-196P9.1-RELATED
Paelopatides13946PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
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