About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides13996FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides13997-
Paelopatides13998FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides13999ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides14000D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL
Paelopatides14001-
Paelopatides14002-
Paelopatides14003RETROTRANSPOSON
Paelopatides14004PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides14005-
Paelopatides14006REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides14007-
Paelopatides14008BEN DOMAIN-CONTAINING PROTEIN 5
Paelopatides14009SAM (S-ADENOSYL METHIONINE) TRANSPORTER
Paelopatides14010SAM (S-ADENOSYL METHIONINE) TRANSPORTER
Paelopatides14011REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides14012REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides14013F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides14014-
Paelopatides14015-
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