About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides14037TRANSPOSON
Paelopatides14038REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides14039-
Paelopatides14040PROPERDIN
Paelopatides14041ENDONUCLEASE-RELATED
Paelopatides14042-
Paelopatides14043PROTEIN CBG26694
Paelopatides14044ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides14045-
Paelopatides14046HYDROXYMETHYLGLUTARYL-COA LYASE
Paelopatides14047ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides14048TRANSPOSON
Paelopatides14049ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides14050CHOLINE/ETHANOALAMINE KINASE
Paelopatides14051NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides14052ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides14053-
Paelopatides14054OXIDOREDUCTASE HTATIP2
Paelopatides14055FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides14056BUCENTAUR RELATED
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