About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides14483-
Paelopatides14484ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides14485SARCOSINE DEHYDROGENASE-RELATED
Paelopatides14486-
Paelopatides14487ATP-DEPENDENT RNA HELICASE DBP3
Paelopatides14488ATP-DEPENDENT RNA HELICASE DBP3
Paelopatides14489MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED
Paelopatides14490LIM/HOMEOBOX PROTEIN LHX
Paelopatides14491PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides14492PLEXIN
Paelopatides14493B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides14494-
Paelopatides14495ENZYMATIC POLYPROTEIN-RELATED
Paelopatides14496TRANSPOSON TY3-I GAG-POL POLYPROTEIN
Paelopatides14497ENDOPLASMIC RETICULUM PROTEIN ERP29
Paelopatides14498GLYOXALASE DOMAIN-CONTAINING PROTEIN 4
Paelopatides14499-
Paelopatides14500RETROTRANSPOSON
Paelopatides14501MITOCHONDRIAL RIBOSOMAL PROTEIN S23
Paelopatides14502PUTATIVE-RELATED
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