About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides14526-
Paelopatides14527-
Paelopatides14528REVERSE TRANSCRIPTASES
Paelopatides14529RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Paelopatides14530NETRIN/LAMININ-RELATED
Paelopatides14531DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL
Paelopatides14532DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL
Paelopatides14533ALR/ERV
Paelopatides14534LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED
Paelopatides14535RETROTRANSPOSON
Paelopatides14536-
Paelopatides14537EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides14538-
Paelopatides14539FI04643P-RELATED
Paelopatides14540PKSB
Paelopatides14541PKSB
Paelopatides14542MICROSOMAL GLUTATHIONE S-TRANSFERASE
Paelopatides14543-
Paelopatides14544NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides14545RETROTRANSPOSON
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