About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides14352POLYCOMB GROUP PROTEIN
Paelopatides14353PROTEIN CBG26694
Paelopatides14354ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides14355PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides14356-
Paelopatides14357FAST LEU-RICH DOMAIN-CONTAINING
Paelopatides1435839S RIBOSOMAL PROTEIN L54, MITOCHONDRIAL
Paelopatides14359METHYLTRANSFERASE TYPE 11
Paelopatides14361-
Paelopatides14362ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides14363AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED
Paelopatides14364GENERAL RECEPTOR FOR PHOSPHOINOSITIDES 1-ASSOCIATED SCAFFOLD PROTEIN-RELATED
Paelopatides14366DNA-DIRECTED RNA POLYMERASE I,II,III
Paelopatides14367TRANSIENT RECEPTOR POTENTIAL CHANNEL
Paelopatides14368FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides14369FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides14370BUCENTAUR RELATED
Paelopatides14371-
Paelopatides14372-
Paelopatides14374PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
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