About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides15638-
Paelopatides15639-
Paelopatides15640PROTEIN, PUTATIVE-RELATED
Paelopatides15641ANNEXIN
Paelopatides15642DUF3504 DOMAIN-CONTAINING PROTEIN
Paelopatides15643-
Paelopatides15644-
Paelopatides15645ENDONUCLEASE-RELATED
Paelopatides15646POL PROTEIN
Paelopatides15647OVARIAN-SPECIFIC SERINE/THREONINE-PROTEIN KINASE LOK-RELATED
Paelopatides15648LYSM AND PUTATIVE PEPTIDOGLYCAN-BINDING DOMAIN-CONTAINING PROTEIN
Paelopatides15649-
Paelopatides15650-
Paelopatides15651PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides15658ENDONUCLEASE
Paelopatides15659REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides15660-
Paelopatides15661CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides15662YES-ASSOCIATED PROTEIN YAP1 FAMILY MEMBER
Paelopatides15663-
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