About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides15707-
Paelopatides15708SI:CH211-196P9.1-RELATED
Paelopatides15709-
Paelopatides15710-
Paelopatides15711ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides15712RETROTRANSPOSON
Paelopatides15713RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR
Paelopatides15714-
Paelopatides15715REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides15716AP ENDONUCLEASE
Paelopatides15717NON-LTR RETROLELEMENT REVERSE TRANSCRIPTASE-LIKE PROTEIN-RELATED
Paelopatides15718VACUOLAR ATP SYNTHASE SUBUNIT H
Paelopatides15719SERINE HYDROXYMETHYLTRANSFERASE
Paelopatides15720SERINE HYDROXYMETHYLTRANSFERASE
Paelopatides15721SCAVENGER RECEPTOR CLASS F
Paelopatides15722ENHANCER OF POLYCOMB
Paelopatides15723-
Paelopatides15724ATP-DEPENDENT RNA HELICASE
Paelopatides15725ACYLPYRUVASE
Paelopatides15726PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
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