About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides16466SOLUBLE LIVER ANTIGEN/LIVER PANCREAS ANTIGEN
Paelopatides16467OPSIN
Paelopatides16468OXIDASE/PEROXIDASE
Paelopatides16469OXIDASE/PEROXIDASE
Paelopatides16470ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides16471FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides16472-
Paelopatides16473MULTI-COPPER OXIDASE
Paelopatides16475EG:EG0003.4 PROTEIN-RELATED
Paelopatides16476RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6
Paelopatides16477ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides16478PROTEIN CBG26694
Paelopatides16479-
Paelopatides16480BONUS, ISOFORM C-RELATED
Paelopatides16481HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides16482-
Paelopatides16483HEPARAN SULFATE 2-O-SULFOTRANSFERASE
Paelopatides16484-
Paelopatides16485ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides16486UNCONVENTIONAL MYOSIN-XVI
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