About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides18005-
Paelopatides18006ARCHAEMETZINCIN
Paelopatides18007ANKYRIN REPEAT PROTEIN
Paelopatides18008-
Paelopatides18009-
Paelopatides18010-
Paelopatides18012PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides1801352 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Paelopatides18014ENDONUCLEASE-RELATED
Paelopatides18015ENZYMATIC POLYPROTEIN-RELATED
Paelopatides18016HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Paelopatides18017ENDONUCLEASE
Paelopatides18018LITHOSTATHINE
Paelopatides18019TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides18020-
Paelopatides18021-
Paelopatides18022PHD-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides18023RETROTRANSPOSON
Paelopatides18024ACYL-COA DEHYDROGENASE
Paelopatides18025REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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