About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides18258F5/8 TYPE C DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides18259PROTEIN, PUTATIVE-RELATED
Paelopatides18260-
Paelopatides18261PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
Paelopatides18262PROTEIN-COUPLED RECEPTOR GPR1, PUTATIVE-RELATED
Paelopatides18263-
Paelopatides18266PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides18267DYNEIN LIGHT CHAIN
Paelopatides18268DIACYLGLYCEROL LIPASE HOMOLOG-RELATED
Paelopatides18269UPF0240 PROTEIN
Paelopatides18270TRANSPOSASE, PUTATIVE-RELATED
Paelopatides18271REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides18272XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
Paelopatides18273BIFUNCTIONAL POLYNUCLEOTIDE PHOSPHATASE/KINASE
Paelopatides18274PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides18275CXC DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides18276ENDONUCLEASE-RELATED
Paelopatides18277POL PROTEIN
Paelopatides18278REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides18279PROTEIN CBG26694
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