About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides18364-
Paelopatides18365-
Paelopatides18366ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7
Paelopatides18367-
Paelopatides18368REVERSE TRANSCRIPTASE
Paelopatides18369ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides18370ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides18371-
Paelopatides18372SERINE-THREONINE PROTEIN KINASE
Paelopatides18373DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Paelopatides18374L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides18375TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6
Paelopatides18376ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Paelopatides18377REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides18378ENZYMATIC POLYPROTEIN-RELATED
Paelopatides18379-
Paelopatides18380ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides18381-
Paelopatides18382-
Paelopatides18383ZNF44 PROTEIN
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