About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides18280CULLIN
Paelopatides18281-
Paelopatides18282PROTEIN CBG26694
Paelopatides18283RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Paelopatides18284REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides18285ZGC:101858
Paelopatides18286RETROTRANSPOSON
Paelopatides18287CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
Paelopatides18288METHYLTRANSFERASE
Paelopatides18290REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides18291GUANYLYL CYCLASE
Paelopatides18292-
Paelopatides18293ZINC FINGER PROTEIN 142
Paelopatides18294ZINC FINGER PROTEIN
Paelopatides18295SAL-LIKE PROTEIN
Paelopatides18296SAL-LIKE PROTEIN
Paelopatides18297ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides18298CUB DOMAIN-CONTAINING PROTEIN
Paelopatides18299PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Paelopatides18300GTPASE, IMAP FAMILY MEMBER-RELATED
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