About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides18321ENDONUCLEASE-RELATED
Paelopatides18322-
Paelopatides18323-
Paelopatides18324ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides18325PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides18326KYNURENINASE
Paelopatides18327CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED
Paelopatides18331REVERSE TRANSCRIPTASES
Paelopatides18332MACROGLOBULIN / COMPLEMENT
Paelopatides18333PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides18334-
Paelopatides18335PROTEIN CBG26694
Paelopatides18336PROTEIN CBG26694
Paelopatides18337PROTEIN CBG26694
Paelopatides18338PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides18339FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides18340PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides18341NOTCH LIGAND FAMILY MEMBER
Paelopatides18342CEREBRAL CAVERNOUS MALFORMATIONS PROTEIN 2 HOMOLOG
Paelopatides18343REVERSE TRANSCRIPTASES
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