About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides1840660S RIBOSOMAL PROTEIN L35A
Paelopatides18407DYNEIN REGULATORY COMPLEX PROTEIN 9
Paelopatides18408-
Paelopatides18409PROTEIN CBG26694
Paelopatides18410PROTEIN CBG26694
Paelopatides18411TRANSCRIPTASE, PUTATIVE-RELATED-RELATED
Paelopatides18412T-LYMPHOCYTE ACTIVATION ANTIGEN
Paelopatides18414-
Paelopatides18415PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides18418-
Paelopatides1841928S RIBOSOMAL PROTEIN S34, MITOCHONDRIAL
Paelopatides18420THYROTROPH EMBRYONIC FACTOR RELATED
Paelopatides18421MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED
Paelopatides18422ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides18423PROTEIN CBG26694
Paelopatides18424REVERSE TRANSCRIPTASES
Paelopatides18425-
Paelopatides18426PARANEOPLASTIC ANTIGEN
Paelopatides18427PROTEIN CBG26694
Paelopatides18428NEURALIZED
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