About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides18449DENTIN SIALOPHOSPHOPROTEIN
Paelopatides18450-
Paelopatides18451-
Paelopatides18452-
Paelopatides18453GAG-RELATED PROTEIN
Paelopatides18454STEERIN
Paelopatides18455-
Paelopatides18456THIOREDOXIN PEROXIDASE
Paelopatides18457ENDONUCLEASE-RELATED
Paelopatides18458PERFORIN-LIKE PROTEIN 1
Paelopatides18459ALPHA- 1,3 -FUCOSYLTRANSFERASE
Paelopatides18460GEO07743P1
Paelopatides18461WD-REPEAT PROTEIN 18
Paelopatides18462CELL CYCLE CHECKPOINT PROTEIN RAD17
Paelopatides18463MULTICOPPER OXIDASE-RELATED
Paelopatides18464-
Paelopatides18465REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides18466DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Paelopatides18467-
Paelopatides18470NF-KAPPA-B-REPRESSING FACTOR-RELATED
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