About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides18706METHYLTHIORIBOSE KINASE
Paelopatides18707METHYLTHIORIBOSE KINASE
Paelopatides18708PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Paelopatides18709-
Paelopatides18710PYRUVOYL TETRAHYDROBIOPTERIN SYNTHASE
Paelopatides18711-
Paelopatides18712-
Paelopatides18713-
Paelopatides18714UNCHARACTERIZED
Paelopatides18715NACHT DOMAIN-CONTAINING PROTEIN
Paelopatides18716PROTEIN CBG26694
Paelopatides18717VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5B2-RELATED
Paelopatides18718VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5B2-RELATED
Paelopatides18719-
Paelopatides18720ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED
Paelopatides18721PROTEIN CBG26694
Paelopatides18722PROTEIN CBG26694
Paelopatides18723REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides18724ATF6, ISOFORM C
Paelopatides18725REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
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