About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides18748TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN
Paelopatides18749SYNAPTOTAGMIN
Paelopatides18750-
Paelopatides18751UNCHARACTERIZED
Paelopatides18752PROTEIN CBG26694
Paelopatides18760-
Paelopatides18761-
Paelopatides18762-
Paelopatides18763BOMB/KIRA PROTEINS
Paelopatides18764-
Paelopatides18765-
Paelopatides18766RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C
Paelopatides18767-
Paelopatides18768-
Paelopatides18769-
Paelopatides18770IRON-SULFUR CLUSTER ASSEMBLY ENZYME NIFU HOMOLOG
Paelopatides18771-
Paelopatides18772SERINE/THREONINE-PROTEIN KINASE PLK
Paelopatides18773XPA-BINDING PROTEIN 1-RELATED
Paelopatides18774BAP28
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