About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides18575-
Paelopatides18577GTPASE, IMAP FAMILY MEMBER-RELATED
Paelopatides18578GDP-D-GLUCOSE PHOSPHORYLASE 1
Paelopatides18579BRISC AND BRCA1-A COMPLEX MEMBER 2
Paelopatides18580ADP RIBOSYLATION FACTOR-RELATED
Paelopatides18581PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides18582ENZYMATIC POLYPROTEIN-RELATED
Paelopatides18583PROTEIN CBG26694
Paelopatides18585ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
Paelopatides18586-
Paelopatides18587REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides18588-
Paelopatides18589DNA HELICASE RECQ FAMILY MEMBER
Paelopatides18590UNCHARACTERIZED
Paelopatides18591TRANSPOSABLE ELEMENT-RELATED
Paelopatides18592-
Paelopatides18593REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides18594-
Paelopatides18595REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Paelopatides18596ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
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