About Paelopatides sp. Yap

The hadal sea cucumber Paelopatides sp. Yap is a species of hadal sea cucumber in the family Stichopodidae, collected from the Yap Trench in the western Pacific Ocean. This species is adapted to the extreme conditions of the hadal zone, thriving at great depths where pressures are immense and temperatures are near freezing. Its discovery contributes to our understanding of biodiversity and ecological dynamics in one of the least explored regions of the deep sea.

Classification

Animalia Kingdom; Echinodermata (Phylum); Holothuroidea (Class); Stichopodidae (Family); Paelopatides (Genus); Paelopatides sp. Yap (Species)


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Paelopatides sp. YapEchinodermataPaelopatides sp. YapDeep sea6,633Yap Trench at 8°1′22"N; 137°50′41"E-

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
-3.7GbContig2020-Fujian Agriculture and Forestry UniversityPRJCA00378989.40 137.138.1976.0657,522

References
TitleJournalPubmed ID
The genome of a hadal sea cucumber reveals novel adaptive strategies to deep-sea environmentsiScience36444293

Gene Information

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Gene IDDescription
Paelopatides18952MYND-TYPE DOMAIN-CONTAINING PROTEIN
Paelopatides18953L1 TRANSPOSABLE ELEMENT-RELATED
Paelopatides18954ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Paelopatides18955NXPE FAMILY MEMBER
Paelopatides18956B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR
Paelopatides18957ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Paelopatides18958FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides18959GAG-RELATED PROTEIN
Paelopatides18960AMMONIUM TRANSPORTER
Paelopatides18961AMMONIUM TRANSPORTER
Paelopatides18962ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN
Paelopatides18963PROTEIN CBR-CLEC-78
Paelopatides18964EGF-LIKE DOMAIN-CONTAINING PROTEIN
Paelopatides18965TMEM26 PROTEIN
Paelopatides18966PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Paelopatides18967-
Paelopatides18968-
Paelopatides18970FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Paelopatides18974L-GULONOLACTONE OXIDASE
Paelopatides18975ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
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